Functional Genomics in Aquaculture by Marco Saroglia, Zhanjiang (John) Liu

By Marco Saroglia, Zhanjiang (John) Liu

Genomics has revolutionized organic examine over the process the final 20 years. Genome maps of key agricultural species have provided elevated knowing of the constitution, association, and evolution of animal genomes. construction upon this origin, researchers at the moment are emphasizing learn on genome functionality. released with the World Aquaculture SocietyFunctional Genomics in Aquaculture looks on the advances during this box as they without delay relate to key characteristics and species in aquaculture production.

Functional Genomics in Aquaculture opens with chapters that supply an invaluable normal advent to the sector of useful genomics. the second one component to the e-book makes a speciality of key construction features comparable to progress, improvement, copy, food, and physiological reaction to emphasize and ailments. the ultimate 5 chapters specialize in a number of key aquaculture species. Examples our realizing of the sensible genomes of salmonids, Mediterranean sea bass, Atlantic cod, catfish, shrimp, and molluscs, are integrated within the book.

Providing necessary insights and discoveries into the sensible genomes of finfish and shellfish species, Functional Genomics in Aquaculture, could be a useful source to researchers and execs in aquaculture, genetics, and animal science.

Chapter 1 useful Genomics study in Aquaculture: ideas and basic methods (pages 1–40): Shikai Liu, Yu Zhang, Fanyue solar, Yanliang Jiang, Ruijia Wang, Chao Li, Jiaren Zhang and Zhanjiang (john) Liu
Chapter 2 Genomic assets for practical Genomics in Aquaculture Species (pages 41–77): Jiaren Zhang, Yanliang Jiang, Fanyue solar, Yu Zhang, Ruijia Wang, Chao Li, Shikai Liu and Zhanjiang (john) Liu
Chapter three creation, development, and Insulin?Like development Factor?I (IGF?I) Gene Expression as an immediate progress Indicator in Nile Tilapia Oreochromis Niloticus (pages 79–89): Christopher L. Brown, Emmanuel M. vera Cruz, Remedios B. Bolivar and Russell J. Borski
Chapter four Gene Expression trend in the course of ecu Sea Bass Larvae improvement: impression of nutritional supplements (pages 91–111): David Mazurais, Maria Darias, Ignacio Fernandez, Chantal Cahu, Enric Gisbert and Jose?Luis Zambonino?Infante
Chapter five Transcriptomics of the Compensatory progress in eu Sea Bass Dicentrarchus labrax (pages 113–128): Genciana Terova, Samuela Cora, Tiziano Verri, Rosalba Gornati, Giovanni Bernardini and Marco Saroglia
Chapter 6 useful Genomic research of the dietary and Hormonal legislation of Fish Glucose and Lipid Metabolism (pages 129–145): Sandrine Skiba?Cassy, Sergio Polakof, Iban Seilez and Stephane Panserat
Chapter 7 Genomic Responses to emphasize demanding situations in Fish (pages 147–168): Lluis Tort and Mariana Teles
Chapter eight useful Genomic research of intercourse selection and Differentiation in Teleost Fish (pages 169–204): Francesc Piferrer, Paulino Martenez, Laia Ribas, Ana Vi?nas and Noelia Diaz
Chapter nine practical Genomics of tension: Molecular Biomarkers for comparing Fish CNS job (pages 205–218): Chiara Tognoli, Rosalba Gornati, Marco Saroglia, Genciana Terova and Giovanni Bernardini
Chapter 10 The SoLute provider (SLC) kin sequence in Teleost Fish (pages 219–320): Tiziano Verri, Genciana Terova, Alessandro Romano, Amilcare Barca, Paola Pisani, Carlo Storelli and Marco Saroglia
Chapter eleven Next?Generation Sequencing and practical Genomic research in Rainbow Trout (pages 321–337): Mohamed Salem
Chapter 12 sensible Genomics learn of Atlantic Cod Gadus morhua (pages 339–348): Matthew L. Rise
Chapter thirteen Catfish sensible Genomics: development and views (pages 349–360): Eric Peatman
Chapter 14 sensible Genomics in Shrimp ailment keep an eye on (pages 361–375): Arun okay. Dhar and Refugio Robles?Sikisaka
Chapter 15 functions of practical Genomics in Molluscs Aquaculture (pages 377–395): A. Figueras, M. M. Costa and B. Novoa

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During the course of evolution, chromosome rearrangement, gene duplication, gene divergence, and gene loss have occurred. However, in vertebrates, gene arrangement in chromosomes is usually conserved, and can be classified into conserved syntenies. , 1996). , 2004). Orthology refers to a gene in two or more species that has evolved from a common ancestor. As evolutionary studies are often from inference rather than tested by experiments, the evolutionary origin of a gene is mostly inferred from conserved syntenies.

2010 McClelland and Naish, 2010 Rainbow trout Rainbow trout Life history Spawning time Rainbow trout Rainbow trout Rainbow trout Rainbow trout Rainbow trout Arctic charr Osmoregulation capacities Development rate Whirling disease resistance Growth Smoltification Body weight, condition factor and age of sexual maturation Salinity tolerance Growth Body weight, morphometric traits and stress response Sex determination and body growth Sex determination Muscle fiber-related QTL Disease resistance Growth Resistance against summer mortality Size-related traits Growth-related traits Growth Arctic charr Asian seabass European seabass Gilthead Sea bream Tilapia Common carp Eastern oyster Pacific Oyster Pacific oyster Zhikong scallop Pacific abalone Blacklip abalone or disease resistance.

2009). , 2010). , 2011). , 2011). Xiang et al. , 2010). , 2011). RNA-Seq has been extensively used for the identification of gene-associated markers. , 2011). , 2010). Comparisons of Gene Expression Profiling Techniques Hybridization-based approaches represented by microarrays are currently most popular for gene expression profiling and are readily affordable for many laboratories. , Affymetrix, Agilent, and NimbleGen). Microarray approaches are high throughput and relatively inexpensive. , 2007); and a limited dynamic range of detection because of both background and saturation of signals.

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